Registers the dsh-mol stdio MCP server, built on RDKit with no network access, into a DSH profile. It exposes 12 tools: three-level SMILES validation with human-readable diagnostics and character positions, molecular properties, drug-likeness and structural alerts, structure rendering to PNG/SVG, multi-molecule grids, format conversion (SMILES, InChI, InChIKey, MOL, SDF, formula), standardisation with a per-step change log, deduplication, SMARTS substructure matching, fingerprint similarity, and batch clean-up that reports every rejected row. The patch only registers the server; the tools live in this repository's Python package and must be installed first — the README gives a `pip install` route and a from-source route, and until the package is on PyPI the from-source one is what works.
Install
# from GitHub (first run asks for allowBuilds approval — follow the hint, retry)
dsh plugin --profile web add github:Yijian-quiet/dsh-mol#path:/dsh-bundle
Any plugin you install runs third-party code with your own permissions — it can read your files, use your credentials, and reach the network, and tool approvals don’t sandbox it. GitHub-sourced plugins also run build scripts at install time — pnpm blocks those until you allow them, so an install can stop with ERR_PNPM_GIT_DEP_PREPARE_NOT_ALLOWED or ERR_PNPM_IGNORED_BUILDS; dsh prints the exact key to add under allowBuilds in your profile’s pnpm-workspace.yaml, and the install works on the next run. Allowing a build is a trust decision: only install sources you trust, and pin a commit (github:owner/repo#sha).
Links
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